pele.gui.graph_viewer

class pele.gui.graph_viewer.ShowPathAction

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class ShowPathAction(QtWidgets.QAction):

this action will show the minimum energy path to minimum1

class pele.gui.graph_viewer.ColorByCommittorAction

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class ColorByCommittorAction(QtWidgets.QAction):

this action will color the graph by committor probabilities

GraphViewWidget.make_graph_from()

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def make_graph_from(self, minima, cutoff=1):

rebuild the graph using only the passed minima and those in self.from_minima

GraphViewWidget.make_graph()

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def make_graph(self, database=None, minima=None):

build an nx graph from the database

GraphViewWidget.show_graph()

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def show_graph(self, fixed=False, show_ids=True):

draw the graph