pele
Python energy landscape explorer
pele::HarmonicAtomList Member List
This is the complete list of members for pele::HarmonicAtomList, including all inherited members.
_atoms1pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected]
_atoms2pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected]
_distpele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected]
_interactionpele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected]
_ndimpele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected, static]
_one_listpele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [protected]
add_energy_gradient(Array< double > x, Array< double > grad)pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [inline, virtual]
add_energy_gradient_hessian(Array< double > x, Array< double > grad, Array< double > hess)pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [inline, virtual]
AtomListPotential(std::shared_ptr< harmonic_interaction > interaction, std::shared_ptr< cartesian_distance< 3 > > dist, Array< size_t > &atoms1, Array< size_t > &atoms2)pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [inline, protected]
AtomListPotential(std::shared_ptr< harmonic_interaction > interaction, std::shared_ptr< cartesian_distance< 3 > > dist, Array< size_t > &atoms1)pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [inline, protected]
get_energy(Array< double > x)pele::AtomListPotential< harmonic_interaction, cartesian_distance< 3 > > [inline, virtual]
get_energy_gradient(Array< double > x, Array< double > grad)pele::BasePotential [inline, virtual]
get_energy_gradient_hessian(Array< double > x, Array< double > grad, Array< double > hess)pele::BasePotential [inline, virtual]
get_hessian(Array< double > x, Array< double > hess)pele::BasePotential [inline, virtual]
HarmonicAtomList(double k, Array< size_t > atoms1, Array< size_t > atoms2)pele::HarmonicAtomList [inline]
HarmonicAtomList(double k, Array< size_t > atoms1)pele::HarmonicAtomList [inline]
numerical_gradient(Array< double > x, Array< double > grad, double eps=1e-6)pele::BasePotential [inline, virtual]
numerical_hessian(Array< double > x, Array< double > hess, double eps=1e-6)pele::BasePotential [inline, virtual]
~BasePotential()pele::BasePotential [inline, virtual]
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